Genomatix software suite

This package includes for example. Additionally, it includes various programs for the definition and search of complex regulatory patterns. A package to characterize your gene sets by various criteria, analyze pathway data or search scientific literature with keywords. In addition to the software launch boxes the Genomatix Software Suite provides access to all tasks via the navigation bar displayed on top of the main menu.

This means individual. Modules Modules of the Genomatix Software Suite. Mapping to genomes and transcriptomes of 33 organisms. Detection of known and de-novo splicing events. Support for bisulfite sequencing reads. For genome mappings, Bowtie2 is supported in addition to the Genomatix Mapper.

Statistics and classification of reads based on our excellent proprietary genome annotation. A true second-level analysis that shows you the biology behind your data.

Exhaustive cross-mapping with a superior proprietary algorithm of all transcripts between the different organisms leading to: Superior ortholog grouping in 25, homology groups with groups containing all vertebrates in ElDorado homo, chimp, rat, mouse, zebrafish, chicken, dog, cow.

No paralogs in the groups! New ultrafast algorithm for mapping sequences onto genomes Precise promoter annotation and prediction by multiple lines of evidence approach All single probes from Affymetrix GeneChip probe sets are annotated.